Example of file735 (output from gebvtest.py)
735 brd pop trt evaldate m ntest mean_y std_y dv mean_x std_x b0 se_b0 b1 se_b1 ncand i_est Exp_b1 R2 fb year test1_5 pass 735 HOL ABC mil 20130125 1 164 513.5305 778.3460 GM 1047.9085 599.7705 -559.4908 75.2181 1.0221 0.0625 177 0.0349 0.9704 62.3 N 2004 Y-Y-Y-Y-Y PASS 735 HOL ABC mil 20130125 2 164 513.5305 778.3460 GM 1244.3415 548.5820 -435.7265 127.5286 0.7607 0.0941 177 0.0000 1.0000 28.8 N 2004 --------- ---- 735 HOL ABC fat 20130125 1 164 21.7988 29.3689 GM 37.7195 20.1377 -17.6911 3.3820 1.0473 0.0794 176 0.0451 0.9535 51.8 N 2004 Y-Y-Y-Y-Y PASS 735 HOL ABC fat 20130125 2 164 21.7988 29.3689 GM 44.3354 20.4904 -9.4365 4.7692 0.7028 0.0978 176 0.0000 1.0000 24.2 N 2004 --------- ---- 735 HOL ABC pro 20130125 1 164 19.1098 20.5441 GM 35.1768 15.7148 -16.1002 2.5245 1.0000 0.0657 176 0.0268 0.9740 58.8 N 2004 Y-Y-N-Y-Y PASS 735 HOL ABC pro 20130125 2 164 19.1098 20.5441 GM 40.7683 15.3681 -8.3744 3.9365 0.6722 0.0905 176 0.0000 1.0000 25.4 N 2004 --------- ---- 735 HOL ABC scs 20130125 1 163 2.9470 0.2531 GM 2.9187 0.1672 0.1730 0.2705 0.9503 0.0926 172 0.0052 0.9907 39.6 N 2004 Y-Y-N-Y-Y PASS 735 HOL ABC scs 20130125 2 163 2.9470 0.2531 GM 2.9381 0.1400 0.6057 0.3763 0.7964 0.1279 172 0.0000 1.0000 19.4 N 2004 --------- ---- 735 HOL ABC usu 20130125 1 158 2.8046 6.0223 GM 6.1859 4.1962 -2.6351 0.2251 0.8768 0.0300 169 0.0028 0.9944 37.3 N 2004 N-N-N-Y-Y FAIL 735 HOL ABC usu 20130125 2 158 2.8046 6.0223 GM 5.9575 3.6793 -1.4425 0.2734 0.7089 0.0388 169 0.0000 1.0000 18.9 N 2004 --------- ----
Example of file735adj (output from gebvtest.py with specific results on base adjustment)
brd pop trt evaldate p_base Ne/N N Ne a_base b_base bval bvadj pass padj R2adj R2val WdR0 WdR1 WdR2 WdR3 WdR4 WdR5+ NdR0 NdR1 NdR2 NdR3 NdR4 NdR5+ HOL ABC mil 20240812 0.250 0.524 570 299 -384.112 1.042 0.940 0.902 PASS PASS 97.8 39.4 88.0 10.5 1.2 0.2 0.0 0.0 45.6 21.9 10.5 7.9 2.6 11.4 HOL ABC fat 20240812 0.250 0.524 570 299 -10.893 1.059 0.774 0.730 hiSE FAIL 97.8 25.1 88.0 10.5 1.2 0.2 0.0 0.0 45.6 21.9 10.5 7.9 2.6 11.4 HOL ABC pro 20240812 0.250 0.391 620 242 -11.660 1.040 0.873 0.839 PASS PASS 97.9 32.3 77.8 19.8 2.1 0.4 0.0 0.0 29.8 30.6 12.9 8.9 4.0 13.7 HOL ABC scs 20240812 0.250 0.114 710 81 0.061 0.984 1.093 1.111 PASS PASS 99.1 1.0 55.0 38.6 4.6 1.3 0.4 0.1 5.6 16.2 7.7 9.2 11.3 50.0
Example of file735*.csv (output from gebvtest.py, comma-separated file with additional results)
brd,pop,trt,evaldate,rundate,badj,Yval,min_byr,fb,nbadj,ncand,ntest,b_base,b1-Cr,b1-Gr,E(b1-Cr),E(b1-Gr),se(b1-Cr),se(b1-Gr),t-Cr,t-Gr,P(b=Eb)Cr,P(b=Eb)Gr,b-stat,b-pract,b-bio,b1-test,R-sqG,R-sq+,P(R-sq+),R2-test,tests,pass,GEBV-bias,EBV-bias,P(unb_Gave),P(unb_G2sd),P(unb_Eave),P(unb_E2sd),GEBVf_sd,V(Gf-Gr),s(Y-Ga),s(Y-G2),s(Y-Ea),s(Y-E2),Y-Gave,Y-G1sd,Y-G2sd,mean-Y,mean-Gr,mean-Cr,sd-Y,sd-Gr,sd-Cr,rel-Y,rel-Gr,rel-Cr,R2/rel-Gr,R2/rel-Cr,b0-Gr,se-b0-Gr,b0-Cr,se-b0-Cr,se-b1-Cr HOL,ABC,mil,20120801,20240812,E,DG,2004,N,570,177,164,1.042,1.057,0.902,0.957,0.952,0.091,0.095,1.1,-0.5,27.20,57.60,Pass,Pass,Pass,Pass,39.4,-5.5,15.40,NS-,YYY-,PASS,..(.)..,..(.)..,0.8,90.2,99.9,95.8,840.19,385874,0.42,0.28,0.40,0.27,355.377,294.282,233.188,1064.972,707.550,912.185,903.443,624.813,571.487,91.8,69.2,37.5,57,120,424.562,82.286,98.973,98.231,0.092 HOL,ABC,fat,20120801,20240812,E,DG,2004,N,570,176,164,1.059,0.680,0.730,0.925,0.928,0.091,0.096,-2.7,-2.1,0.60,3.00,Low,Low,Low,Fail,25.1,2.6,73.50,NS+,NNN-,FAIL,..(.)..,..(.).+,99.9,99.9,99.9,6.8,29.06,611.0,0.19,-0.20,0.13,-0.27,5.603,-0.146,-5.895,34.659,29.060,36.068,31.137,21.330,21.703,91.8,69.2,37.5,36,60,13.436,3.561,10.023,4.172,0.099 HOL,ABC,pro,20120801,20240812,E,DG,2004,N,620,176,164,1.040,0.791,0.839,0.954,0.957,0.107,0.098,-1.5,-1.2,11.40,19.40,Pass,Pass,Low,Pass,32.3,4.9,79.70,NS+,YYN-,PASS,..(.)..,..(.)..,0.2,99.6,99.9,99.9,22.49,316.6,0.49,0.26,0.45,0.22,11.004,8.371,5.739,36.017,24.941,30.759,23.991,16.351,15.990,91.8,68.6,37.9,47,72,15.019,2.827,11.562,3.493,0.101 HOL,ABC,scs,20120801,20240812,E,DG,2004,N,710,172,161,0.984,0.370,1.111,0.982,0.982,0.881,0.796,-0.7,0.2,45.40,90.20,Pass,Pass,Pass,Pass,1.0,0.9,81.40,NS+,YYY-,PASS,..(.)..,..(.)..,99.9,99.9,99.9,99.9,1.38,1.869,-0.06,-0.03,-0.06,-0.04,-0.084,-0.066,-0.048,2.815,2.931,2.951,1.931,0.165,0.138,84.9,66.6,0.0,2,0,-0.411,2.552,1.754,3.096,1.047