2024-Aug-11 21:58:24 ./gebvtest_2024A.py: start

Options:  --outdir defaults HOL ABC .

Processing brd=HOL pop=ABC cou=ABC datadir=.

Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
mil   CB EBV         177   573.367   813.411 -1908.00  2962.00
mil   TB EBV         164   544.957   804.675 -1908.00  2962.00
mil   TB  VAL(y)     164  1064.972   903.443 -1436.40  4147.10 Base=Current
mil   TB GEBV(x1)    164  1047.909   599.771  -726.00  2624.00 Base=Old
mil   TB EBVr(x2)    164  1244.341   548.582  -564.00  2616.00 Base=Old
mil   TB GEBV(x1)    164   707.550   624.813 -1140.42  2349.45 Base=Current
mil   TB EBVr(x2)    164   912.185   571.487  -971.66  2341.11 Base=Current
mil   BB  EBVf(y)    570   -97.361   780.743 -2580.00  1884.00
mil   BB  EBVr(x)    570   310.270   745.217 -1984.00  2318.00
mil   BB  EBV(wt)    570    48.554    42.090     0.00    97.00
--------------------------------------------------------------

After Base adjustments:
mil p=0.987 x=-2.213 i=0.035 k=0.079 R2b=0.414 E(b1)=0.952 b1=0.902
mil b1-E(b1) = -0.050  t = -0.53  bootstrap P(b=Eb) = 57.6  b1_test = Pass
mil R2_1 = 39.4  R2_2 = 45.0   bootstrap P(R2_gain) = 15.4  R2_test = NS-
mil   stat_test=Y   pract_test=Y   bio_test=Y   R2_test=-   overall = PASS

2024-Aug-11 21:58:25 ./gebvtest_2024A.py: finished mil


Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
fat   CB EBV         176    24.284    29.839   -65.00    95.00
fat   TB EBV         164    22.939    28.980   -65.00    95.00
fat   TB  VAL(y)     164    34.659    31.137   -35.31   108.31 Base=Current
fat   TB GEBV(x1)    164    37.720    20.138   -19.00    86.00 Base=Old
fat   TB EBVr(x2)    164    44.335    20.490    -4.00    88.00 Base=Old
fat   TB GEBV(x1)    164    29.060    21.330   -31.02    80.20 Base=Current
fat   TB EBVr(x2)    164    36.068    21.703   -15.13    82.32 Base=Current
fat   BB  EBVf(y)    570   -12.807    32.849  -109.00    65.00
fat   BB  EBVr(x)    570    -0.105    30.713   -83.00    81.00
fat   BB  EBV(wt)    570    48.554    42.090     0.00    97.00
--------------------------------------------------------------

After Base adjustments:
fat p=0.982 x=-2.097 i=0.045 k=0.097 R2b=0.270 E(b1)=0.928 b1=0.730
fat b1-E(b1) = -0.197  t = -2.06  bootstrap P(b=Eb) =  3.0  b1_test = Fail
fat R2_1 = 25.1  R2_2 = 22.5   bootstrap P(R2_gain) = 73.5  R2_test = NS+
fat   stat_test=N   pract_test=N   bio_test=N   R2_test=-   overall = FAIL

2024-Aug-11 21:58:25 ./gebvtest_2024A.py: finished fat


Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
pro   CB EBV         176    20.926    22.004   -50.00    89.00
pro   TB EBV         164    20.335    21.066   -50.00    89.00
pro   TB  VAL(y)     164    36.017    23.991   -29.35   102.68 Base=Current
pro   TB GEBV(x1)    164    35.177    15.715   -12.00    72.00 Base=Old
pro   TB EBVr(x2)    164    40.768    15.368    -8.00    76.00 Base=Old
pro   TB GEBV(x1)    164    24.941    16.351   -24.15    63.26 Base=Current
pro   TB EBVr(x2)    164    30.759    15.990   -19.98    67.42 Base=Current
pro   BB  EBVf(y)    620    -4.660    23.030   -72.00    61.00
pro   BB  EBVr(x)    620     7.800    22.285   -56.00    64.00
pro   BB  EBV(wt)    620    35.936    38.719     0.00    97.00
--------------------------------------------------------------

After Base adjustments:
pro p=0.990 x=-2.327 i=0.027 k=0.063 R2b=0.338 E(b1)=0.957 b1=0.839
pro b1-E(b1) = -0.118  t = -1.20  bootstrap P(b=Eb) = 19.4  b1_test = Pass
pro R2_1 = 32.3  R2_2 = 27.4   bootstrap P(R2_gain) = 79.7  R2_test = NS+
pro   stat_test=Y   pract_test=Y   bio_test=N   R2_test=-   overall = PASS

2024-Aug-11 21:58:26 ./gebvtest_2024A.py: finished pro


Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
scs   CB EBV         172     2.946     0.212     2.44     3.72
scs   TB EBV         161     2.944     0.212     2.44     3.72
scs   TB  VAL(y)     161     2.815     1.931    -3.14     9.85 Base=Current
scs   TB GEBV(x1)    161     2.918     0.168     2.38     3.28 Base=Old
scs   TB EBVr(x2)    161     2.938     0.141     2.61     3.20 Base=Old
scs   TB GEBV(x1)    161     2.931     0.165     2.40     3.29 Base=Current
scs   TB EBVr(x2)    161     2.951     0.138     2.63     3.21 Base=Current
scs   BB  EBVf(y)    710     3.157     0.250     2.48     3.85
scs   BB  EBVr(x)    710     3.134     0.224     2.50     3.73
scs   BB  EBV(wt)    710     9.288    21.446     0.00    95.00
--------------------------------------------------------------

After Base adjustments:
scs p=0.998 x=-2.890 i=0.006 k=0.018 R2b=0.010 E(b1)=0.982 b1=1.111
scs b1-E(b1) =  0.129  t =  0.16  bootstrap P(b=Eb) = 90.2  b1_test = Pass
scs R2_1 =  1.0  R2_2 =  0.1   bootstrap P(R2_gain) = 81.4  R2_test = NS+
scs   stat_test=Y   pract_test=Y   bio_test=Y   R2_test=-   overall = PASS

2024-Aug-11 21:58:26 ./gebvtest_2024A.py: finished scs

2024-Aug-11 21:58:26 ./gebvtest_2024A.py: end
