2024-Aug-11 21:22:42 /g1/programs/pete/SRC2/src/is/gebvtest_2024A.py: start

Options:  --outdir G --baseadj=EBV -m --min_byear=2007 HOL ABC .

Processing brd=HOL pop=ABC cou=ABC datadir=.

Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
mil   CB EBV          35   903.543  1020.707 -1687.00  2962.00
mil   TB EBV          28   805.250  1080.555 -1687.00  2962.00
mil   TB  VAL(y)      28  1174.668  1046.482 -1436.40  3589.11 Base=Current
mil   TB GEBV(x1)     28  1238.429   768.863  -726.00  2624.00 Base=Old
mil   TB EBVr(x2)     28  1423.786   687.807  -265.00  2342.00 Base=Old
mil   TB GEBV(x1)     28   906.025   800.965 -1140.42  2349.45 Base=Current
mil   TB EBVr(x2)     28  1099.121   716.525  -660.18  2055.67 Base=Current
mil   BB  EBVf(y)    570   -97.361   780.743 -2580.00  1884.00
mil   BB  EBVr(x)    570   310.270   745.217 -1984.00  2318.00
mil   BB  EBV(wt)    570    48.554    42.090     0.00    97.00
--------------------------------------------------------------

After Base adjustments:
mil p=0.957 x=-1.712 i=0.096 k=0.174 R2b=0.670 E(b1)=0.935 b1=1.011
mil b1-E(b1) =  0.076  t =  0.45  bootstrap P(b=Eb) = 65.4  b1_test = Pass
mil R2_1 = 62.7  R2_2 = 66.6   bootstrap P(R2_gain) = 32.1  R2_test = NS-
mil   stat_test=Y   pract_test=Y   bio_test=Y   R2_test=-   overall = PASS

2024-Aug-11 21:22:42 /g1/programs/pete/SRC2/src/is/gebvtest_2024A.py: finished mil


Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
fat   CB EBV          34    35.471    37.778   -65.00    95.00
fat   TB EBV          28    32.071    38.837   -65.00    95.00
fat   TB  VAL(y)      28    44.274    35.001   -22.28   107.12 Base=Current
fat   TB GEBV(x1)     28    48.214    24.151   -19.00    80.00 Base=Old
fat   TB EBVr(x2)     28    50.857    23.818    -4.00    88.00 Base=Old
fat   TB GEBV(x1)     28    40.176    25.581   -31.02    73.84 Base=Current
fat   TB EBVr(x2)     28    42.975    25.228   -15.13    82.32 Base=Current
fat   BB  EBVf(y)    570   -12.807    32.849  -109.00    65.00
fat   BB  EBVr(x)    570    -0.105    30.713   -83.00    81.00
fat   BB  EBV(wt)    570    48.554    42.090     0.00    97.00
--------------------------------------------------------------

After Base adjustments:
fat p=0.960 x=-1.749 i=0.090 k=0.165 R2b=0.541 E(b1)=0.917 b1=0.951
fat b1-E(b1) =  0.034  t =  0.20  bootstrap P(b=Eb) = 78.8  b1_test = Pass
fat R2_1 = 49.6  R2_2 = 67.5   bootstrap P(R2_gain) =  0.8  R2_test = Fail
fat   stat_test=Y   pract_test=Y   bio_test=Y   R2_test=N   overall = FAIL

2024-Aug-11 21:22:43 /g1/programs/pete/SRC2/src/is/gebvtest_2024A.py: finished fat


Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
pro   CB EBV          34    31.206    28.671   -50.00    89.00
pro   TB EBV          28    27.357    29.966   -50.00    89.00
pro   TB  VAL(y)      28    41.101    28.140   -26.41    90.88 Base=Current
pro   TB GEBV(x1)     28    41.107    19.928   -10.00    72.00 Base=Old
pro   TB EBVr(x2)     28    45.679    19.345     1.00    69.00 Base=Old
pro   TB GEBV(x1)     28    31.112    20.735   -22.06    63.26 Base=Current
pro   TB EBVr(x2)     28    35.868    20.128   -10.62    60.13 Base=Current
pro   BB  EBVf(y)    620    -4.660    23.030   -72.00    61.00
pro   BB  EBVr(x)    620     7.800    22.285   -56.00    64.00
pro   BB  EBV(wt)    620    35.936    38.719     0.00    97.00
--------------------------------------------------------------

After Base adjustments:
pro p=0.936 x=-1.520 i=0.134 k=0.222 R2b=0.454 E(b1)=0.865 b1=0.862
pro b1-E(b1) = -0.004  t = -0.02  bootstrap P(b=Eb) = 93.8  b1_test = Pass
pro R2_1 = 39.3  R2_2 = 44.7   bootstrap P(R2_gain) = 31.8  R2_test = NS-
pro   stat_test=Y   pract_test=Y   bio_test=Y   R2_test=-   overall = PASS

2024-Aug-11 21:22:43 /g1/programs/pete/SRC2/src/is/gebvtest_2024A.py: finished pro


Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
scs   CB EBV          31     2.977     0.153     2.71     3.33
scs   TB EBV          26     2.968     0.142     2.71     3.29
scs   TB  VAL(y)      26     2.221     3.031    -3.14     9.85 Base=Current
scs   TB GEBV(x1)     26     2.946     0.144     2.65     3.21 Base=Old
scs   TB EBVr(x2)     26     2.937     0.116     2.70     3.13 Base=Old
scs   TB GEBV(x1)     26     2.959     0.141     2.67     3.22 Base=Current
scs   TB EBVr(x2)     26     2.949     0.114     2.72     3.14 Base=Current
scs   BB  EBVf(y)    710     3.157     0.250     2.48     3.85
scs   BB  EBVr(x)    710     3.134     0.224     2.50     3.73
scs   BB  EBV(wt)    710     9.288    21.446     0.00    95.00
--------------------------------------------------------------

After Base adjustments:
scs p=0.977 x=-1.986 i=0.057 k=0.116 R2b=0.026 E(b1)=0.886 b1=-3.233
scs b1-E(b1) = -4.120  t = -1.30  bootstrap P(b=Eb) = 16.6  b1_test = NS-
scs R2_1 =  2.3  R2_2 = 13.3   bootstrap P(R2_gain) =  2.3  R2_test = Fail
scs   stat_test=Y   pract_test=N   bio_test=N   R2_test=N   overall = FAIL

2024-Aug-11 21:22:44 /g1/programs/pete/SRC2/src/is/gebvtest_2024A.py: finished scs

2024-Aug-11 21:22:44 /g1/programs/pete/SRC2/src/is/gebvtest_2024A.py: end
