2024-Aug-11 21:22:42 /g1/programs/pete/SRC2/src/is/gebvtest_2024A.py: start

Options:  --outdir G --baseadj=NONE -m --min_byear=2007 HOL ABC .

Processing brd=HOL pop=ABC cou=ABC datadir=.

Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
mil   CB EBV          35   903.543  1020.707 -1687.00  2962.00
mil   TB EBV          28   805.250  1080.555 -1687.00  2962.00
mil   TB  VAL(y)      28  1108.768  1060.027 -1628.58  3524.28
mil   TB GEBV(x1)     28  1238.429   768.863  -726.00  2624.00
mil   TB EBVr(x2)     28  1423.786   687.807  -265.00  2342.00

After Base adjustments:
mil p=0.957 x=-1.712 i=0.096 k=0.174 R2b=0.670 E(b1)=0.935 b1=1.066
mil b1-E(b1) =  0.131  t =  0.72  bootstrap P(b=Eb) = 45.4  b1_test = Pass
mil R2_1 = 62.7  R2_2 = 66.7   bootstrap P(R2_gain) = 31.7  R2_test = NS-
mil   stat_test=Y   pract_test=Y   bio_test=Y   R2_test=-   overall = PASS


Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
fat   CB EBV          34    35.471    37.778   -65.00    95.00
fat   TB EBV          28    32.071    38.837   -65.00    95.00
fat   TB  VAL(y)      28    42.681    35.369   -23.36   105.65
fat   TB GEBV(x1)     28    48.214    24.151   -19.00    80.00
fat   TB EBVr(x2)     28    50.857    23.818    -4.00    88.00

After Base adjustments:
fat p=0.960 x=-1.749 i=0.090 k=0.165 R2b=0.541 E(b1)=0.917 b1=1.017
fat b1-E(b1) =  0.100  t =  0.54  bootstrap P(b=Eb) = 46.0  b1_test = Pass
fat R2_1 = 49.6  R2_2 = 67.8   bootstrap P(R2_gain) =  0.8  R2_test = Fail
fat   stat_test=Y   pract_test=Y   bio_test=Y   R2_test=N   overall = FAIL


Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
pro   CB EBV          34    31.206    28.671   -50.00    89.00
pro   TB EBV          28    27.357    29.966   -50.00    89.00
pro   TB  VAL(y)      28    39.142    28.321   -27.66    88.89
pro   TB GEBV(x1)     28    41.107    19.928   -10.00    72.00
pro   TB EBVr(x2)     28    45.679    19.345     1.00    69.00

After Base adjustments:
pro p=0.936 x=-1.520 i=0.134 k=0.222 R2b=0.468 E(b1)=0.868 b1=0.916
pro b1-E(b1) =  0.048  t =  0.23  bootstrap P(b=Eb) = 86.0  b1_test = Pass
pro R2_1 = 40.6  R2_2 = 46.3   bootstrap P(R2_gain) = 30.2  R2_test = NS-
pro   stat_test=Y   pract_test=Y   bio_test=Y   R2_test=-   overall = PASS


Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
scs   CB EBV          31     2.977     0.153     2.71     3.33
scs   TB EBV          26     2.968     0.142     2.71     3.29
scs   TB  VAL(y)      26     2.230     3.033    -3.13     9.87
scs   TB GEBV(x1)     26     2.946     0.144     2.65     3.21
scs   TB EBVr(x2)     26     2.937     0.116     2.70     3.13

After Base adjustments:
scs p=0.977 x=-1.986 i=0.057 k=0.116 R2b=0.026 E(b1)=0.886 b1=-3.193
scs b1-E(b1) = -4.079  t = -1.31  bootstrap P(b=Eb) = 15.4  b1_test = NS-
scs R2_1 =  2.3  R2_2 = 13.3   bootstrap P(R2_gain) =  2.4  R2_test = Fail
scs   stat_test=Y   pract_test=N   bio_test=N   R2_test=N   overall = FAIL

2024-Aug-11 21:22:44 /g1/programs/pete/SRC2/src/is/gebvtest_2024A.py: end
