2024-Aug-11 21:22:42 /g1/programs/pete/SRC2/src/is/gebvtest_2024A.py: start

Options:  --outdir G --baseadj=NONE -m HOL ABC .

Processing brd=HOL pop=ABC cou=ABC datadir=.

Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
mil   CB EBV         177   573.367   813.411 -1908.00  2962.00
mil   TB EBV         164   544.957   804.675 -1908.00  2962.00
mil   TB  VAL(y)     164  1023.466   903.225 -1628.58  4121.17
mil   TB GEBV(x1)    164  1047.909   599.771  -726.00  2624.00
mil   TB EBVr(x2)    164  1244.341   548.582  -564.00  2616.00

After Base adjustments:
mil p=0.987 x=-2.213 i=0.035 k=0.079 R2b=0.415 E(b1)=0.953 b1=0.941
mil b1-E(b1) = -0.012  t = -0.12  bootstrap P(b=Eb) = 84.8  b1_test = Pass
mil R2_1 = 39.5  R2_2 = 44.9   bootstrap P(R2_gain) = 16.1  R2_test = NS-
mil   stat_test=Y   pract_test=Y   bio_test=Y   R2_test=-   overall = PASS


Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
fat   CB EBV         176    24.284    29.839   -65.00    95.00
fat   TB EBV         164    22.939    28.980   -65.00    95.00
fat   TB  VAL(y)     164    33.607    31.190   -37.42   107.44
fat   TB GEBV(x1)    164    37.720    20.138   -19.00    86.00
fat   TB EBVr(x2)    164    44.335    20.490    -4.00    88.00

After Base adjustments:
fat p=0.982 x=-2.097 i=0.045 k=0.097 R2b=0.272 E(b1)=0.928 b1=0.777
fat b1-E(b1) = -0.151  t = -1.49  bootstrap P(b=Eb) = 12.4  b1_test = NS-
fat R2_1 = 25.2  R2_2 = 22.7   bootstrap P(R2_gain) = 73.5  R2_test = NS+
fat   stat_test=Y   pract_test=N   bio_test=N   R2_test=-   overall = hiSE


Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
pro   CB EBV         176    20.926    22.004   -50.00    89.00
pro   TB EBV         164    20.335    21.066   -50.00    89.00
pro   TB  VAL(y)     164    34.778    23.983   -33.61   101.50
pro   TB GEBV(x1)    164    35.177    15.715   -12.00    72.00
pro   TB EBVr(x2)    164    40.768    15.368    -8.00    76.00

After Base adjustments:
pro p=0.990 x=-2.327 i=0.027 k=0.063 R2b=0.339 E(b1)=0.957 b1=0.874
pro b1-E(b1) = -0.083  t = -0.81  bootstrap P(b=Eb) = 38.8  b1_test = Pass
pro R2_1 = 32.5  R2_2 = 27.6   bootstrap P(R2_gain) = 79.6  R2_test = NS+
pro   stat_test=Y   pract_test=Y   bio_test=Y   R2_test=-   overall = PASS


Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
scs   CB EBV         172     2.946     0.212     2.44     3.72
scs   TB EBV         161     2.944     0.212     2.44     3.72
scs   TB  VAL(y)     161     2.819     1.930    -3.13     9.87
scs   TB GEBV(x1)    161     2.918     0.168     2.38     3.28
scs   TB EBVr(x2)    161     2.938     0.141     2.61     3.20

After Base adjustments:
scs p=0.998 x=-2.890 i=0.006 k=0.018 R2b=0.010 E(b1)=0.982 b1=1.089
scs b1-E(b1) =  0.107  t =  0.14  bootstrap P(b=Eb) = 93.4  b1_test = Pass
scs R2_1 =  1.0  R2_2 =  0.1   bootstrap P(R2_gain) = 81.4  R2_test = NS+
scs   stat_test=Y   pract_test=Y   bio_test=Y   R2_test=-   overall = PASS

2024-Aug-11 21:22:44 /g1/programs/pete/SRC2/src/is/gebvtest_2024A.py: end
