2024-Aug-11 21:22:42 /g1/programs/pete/SRC2/src/is/gebvtest_2024A.py: start

Options:  --outdir G --target=EBV --baseadj=NONE -m HOL ABC .

Processing brd=HOL pop=ABC cou=ABC datadir=.

Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
mil   CB EBV         177   573.367   813.411 -1908.00  2962.00
mil   TB EBV         164   544.957   804.675 -1908.00  2962.00
mil   TB  VAL(y)     164   544.957   804.675 -1908.00  2962.00
mil   TB GEBV(x1)    164  1047.909   599.771  -726.00  2624.00
mil   TB EBVr(x2)    164  1244.341   548.582  -564.00  2616.00

After Base adjustments:
mil p=0.987 x=-2.213 i=0.035 k=0.079 R2b=0.696 E(b1)=0.975 b1=1.103
mil b1-E(b1) =  0.128  t =  1.81  bootstrap P(b=Eb) =  6.2  b1_test = Pass
mil R2_1 = 67.8  R2_2 = 30.9   bootstrap P(R2_gain) =100.0  R2_test = Pass
mil   stat_test=Y   pract_test=Y   bio_test=Y   R2_test=Y   overall = PASS


Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
fat   CB EBV         176    24.284    29.839   -65.00    95.00
fat   TB EBV         164    22.939    28.980   -65.00    95.00
fat   TB  VAL(y)     164    22.939    28.980   -65.00    95.00
fat   TB GEBV(x1)    164    37.720    20.138   -19.00    86.00
fat   TB EBVr(x2)    164    44.335    20.490    -4.00    88.00

After Base adjustments:
fat p=0.982 x=-2.097 i=0.045 k=0.097 R2b=0.594 E(b1)=0.958 b1=1.083
fat b1-E(b1) =  0.124  t =  1.59  bootstrap P(b=Eb) = 13.6  b1_test = Pass
fat R2_1 = 56.9  R2_2 = 26.8   bootstrap P(R2_gain) =100.0  R2_test = Pass
fat   stat_test=Y   pract_test=Y   bio_test=Y   R2_test=Y   overall = PASS


Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
pro   CB EBV         176    20.926    22.004   -50.00    89.00
pro   TB EBV         164    20.335    21.066   -50.00    89.00
pro   TB  VAL(y)     164    20.335    21.066   -50.00    89.00
pro   TB GEBV(x1)    164    35.177    15.715   -12.00    72.00
pro   TB EBVr(x2)    164    40.768    15.368    -8.00    76.00

After Base adjustments:
pro p=0.990 x=-2.327 i=0.027 k=0.063 R2b=0.656 E(b1)=0.977 b1=1.071
pro b1-E(b1) =  0.093  t =  1.28  bootstrap P(b=Eb) = 19.6  b1_test = Pass
pro R2_1 = 64.2  R2_2 = 25.8   bootstrap P(R2_gain) =100.0  R2_test = Pass
pro   stat_test=Y   pract_test=Y   bio_test=Y   R2_test=Y   overall = PASS


Summary statistics on candidate bulls (CB) and test bulls (TB)
--------------------------------------------------------------
Trait Variable         N      Mean       Std      Min      Max
--------------------------------------------------------------
scs   CB EBV         172     2.946     0.212     2.44     3.72
scs   TB EBV         163     2.944     0.212     2.44     3.72
scs   TB  VAL(y)     163     2.944     0.212     2.44     3.72
scs   TB GEBV(x1)    163     2.919     0.167     2.38     3.28
scs   TB EBVr(x2)    163     2.938     0.140     2.61     3.20

After Base adjustments:
scs p=0.998 x=-2.945 i=0.005 k=0.015 R2b=0.488 E(b1)=0.992 b1=0.886
scs b1-E(b1) = -0.106  t = -1.38  bootstrap P(b=Eb) = 17.0  b1_test = Pass
scs R2_1 = 48.4  R2_2 = 27.9   bootstrap P(R2_gain) =100.0  R2_test = Pass
scs   stat_test=Y   pract_test=Y   bio_test=N   R2_test=Y   overall = PASS

2024-Aug-11 21:22:44 /g1/programs/pete/SRC2/src/is/gebvtest_2024A.py: end
