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| == Description of format for IG result files == ||<tablewidth="485px" tableheight="333px">Column ||Name of Variable ||Example || |
## page was renamed from IG_results_file_format = Description of InterGenomics results files format = ---- <<TableOfContents()>> ---- == Format for DGVs, Polygenic effect and gEBVs result files == ||<tablewidth="485px" tableheight="333px">'''Column ''' ||'''Name of Variable ''' ||'''Example ''' || |
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| ||35-49 ||Value ||DGV, polygenic effect, or GEBV || | ||35-49 ||Value ||DGV, polygenic effect, or gEBV || |
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| Example: | Examples: |
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| . '''DGVs''' <<BR>> |
'''DGVs'''<<BR>> |
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. <<BR>> |
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<<BR>> '''GEBV'''<<BR>> |
'''gEBV'''<<BR>> |
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| == Format for SNPs effects result files (tab delimited) == ||<tablewidth="485px" tableheight="333px">'''Column ''' ||'''Name of Variable ''' ||'''Example ''' || ||1 ||Chromosome number || 1|| ||2 ||Position || 135098|| ||3 ||idx on IG reference map || 1|| ||4 ||Sample frequency || 0.3787|| ||5 ||SNP effect || -0.005343431|| ||6 ||SNP Name || Hapmap43437-BTA-101873|| ||6 ||Base population frequency || 0.4004|| |
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| . | == Format for publishable status of Contributor's Holstein young bulls in A.I. (semicolon delimited) == ||<tablewidth="485px" tableheight="333px">'''Column ''' ||'''Name of Variable ''' ||'''Example ''' || ||1 ||Young bulls in A.I. ID ||HOLDEUM000000109152 || ||2 ||Contributor Name || VIT|| ||3 ||Publishable Status (Y/N)|| N|| |
Description of InterGenomics results files format
Contents
Format for DGVs, Polygenic effect and gEBVs result files
Column |
Name of Variable |
Example |
1-3 |
File Identifies |
751, 752, 753 |
4-6 |
Breed |
BSW |
7-9 |
Country |
USA |
11-13 |
Trait |
mil |
15-33 |
Animal ID |
BSWUSAM000000109152 |
35-49 |
Value |
DGV, polygenic effect, or gEBV |
52-57 |
Reliability (if applicable) |
0.6500 |
Examples:
DGVs
751 |
BSW |
CHE |
pro |
BSWUSAM000000109152 |
-64.7036923 |
0.0000 |
751 |
BSW |
CHE |
pro |
BSWDEUM000803611398 |
-46.9769316 |
0.0000 |
751 |
BSW |
CHE |
pro |
BSWUSAM000000118619 |
-23.1922227 |
0.0000 |
Polygenic effects
752 |
BSW |
CHE |
pro |
BSWGRP0000000000000 |
7.9706095 |
0.0000 |
752 |
BSW |
CHE |
pro |
BSWUSAF000000029496 |
7.3884218 |
0.0000 |
752 |
BSW |
CHE |
pro |
BSWUSAM000000021760 |
7.3884218 |
0.0000 |
gEBV
753 |
BSW |
CHE |
pro |
BSWUSAM000000109152 |
-68.9313108 |
0.6500 |
753 |
BSW |
CHE |
pro |
BSWDEUM000803611398 |
-52.4821532 |
0.6500 |
753 |
BSW |
CHE |
pro |
BSWUSAM000000118619 |
-27.5975303 |
0.6700 |
Format for SNPs effects result files (tab delimited)
Column |
Name of Variable |
Example |
1 |
Chromosome number |
1 |
2 |
Position |
135098 |
3 |
idx on IG reference map |
1 |
4 |
Sample frequency |
0.3787 |
5 |
SNP effect |
-0.005343431 |
6 |
SNP Name |
Hapmap43437-BTA-101873 |
6 |
Base population frequency |
0.4004 |
Format for publishable status of Contributor's Holstein young bulls in A.I. (semicolon delimited)
Column |
Name of Variable |
Example |
1 |
Young bulls in A.I. ID |
HOLDEUM000000109152 |
2 |
Contributor Name |
VIT |
3 |
Publishable Status (Y/N) |
N |