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| . | For information about installation and sample data for testing the program, see [[public/GEBVtest_software]]. |
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| ---------- . usage: gebvtest.py [-h] [-v] [-m] [-M MERGEDIR] [-Z] [-C] brd pop datadir positional arguments: . brd evaluation breed code (BSW/GUE/JER/HOL/RDC/SIM) pop population code (same as country code except for . CHR/DEA/DFS/FRR/FRM) |
=== Running the program === The program should be run from within the '''''programs''''' directory. Typing '''python gebvtest.py --help''' will give a summary of the program usage: {{{ usage: gebvtest.py [-h] [-v] [-m] [-M MERGEDIR] [-Z] [-C] brd pop datadir positional arguments: brd evaluation breed code (BSW/GUE/JER/HOL/RDC/SIM) pop population code (same as country code except for CHR/DEA/DFS/FRR/FRM) |
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| optional arguments: . -h, --help show this help message and exit -v, --verbose increase output verbosity -m, --mergefiles write merged data files (for independent data checks) -M MERGEDIR, --mergedir MERGEDIR . absolute or relative path for merged data files (default=DATADIR/merged) |
optional arguments: -h, --help show this help message and exit -v, --verbose increase output verbosity -m, --mergefiles write merged data files (for independent data checks) -M MERGEDIR, --mergedir MERGEDIR absolute or relative path for merged data files (default=DATADIR/merged) |
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| . or usage at ITBC) | or usage at ITBC) |
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| See detailed instructions at: https://wiki.interbull.org/gebvtest_instructions?action=print ---------- === Sample data for program testing === Some sample data for breed HOL and country ABC are available in the `sample_data` directory. The two programs can be run from the `programs` directory as follows: . python gtconvert.py -v hol abc ../sample_data python gebvtest.py -v -m hol abc ../sample_data The outputs should match those in the source zip file. |
}}} |
Program gebvtest.py - User Manual
UNDER CONSTRUCTION!
Information about the program:
The program gebvtest.py performs the GEBV validation tests for one breed-population combination, for all traits. At the end of the program a zip file is created with the input files and the result file, ready for submission to the ITBC. The ITBC will perform some additional data checks and re-run the program to check the results. The result file is a new file735 format file, which is a modification and extension of the previous file731 format file.
For information about installation and sample data for testing the program, see public/GEBVtest_software.
Running the program
The program should be run from within the programs directory. Typing
python gebvtest.py --help
will give a summary of the program usage:
usage: gebvtest.py [-h] [-v] [-m] [-M MERGEDIR] [-Z] [-C] brd pop datadir
positional arguments:
brd evaluation breed code (BSW/GUE/JER/HOL/RDC/SIM)
pop population code (same as country code except for
CHR/DEA/DFS/FRR/FRM)
datadir absolute or relative path to data files
optional arguments:
-h, --help show this help message and exit
-v, --verbose increase output verbosity
-m, --mergefiles write merged data files (for independent data checks)
-M MERGEDIR, --mergedir MERGEDIR
absolute or relative path for merged data files
(default=DATADIR/merged)
-Z, --no-zip do not create a zip file (eg. for preliminary testing
or usage at ITBC)
-C, --cleanup delete all files successfully added to the zip file