Differences between revisions 2 and 23 (spanning 21 versions)
⇤ ← Revision 2 as of 2019-02-07 14:30:17 →
Size: 1454
Editor: JoannaSendecka
Comment:
← Revision 23 as of 2020-08-13 08:00:01 → ⇥
Size: 10604
Editor: AlexisMichenet
Comment:
Deletions are marked like this. Additions are marked like this.
Line 1: Line 1:
== Accepted Platform-Array Combinations ==
||<tablewidth="624px" tableheight="123px">'''Name Number of SNPs <<BR>>''' ||'''Platform<<BR>>''' ||'''Array<<BR>>''' ||
||Affymetrix Axiom Bovine ||Affymetrix ||648875 ||
||Illumina Bovine3k BeadChip ||Illumina ||2900 ||
||Illumina BovineLD BeadChip ||Illumina ||6909 ||
||Illumina BovineLD v1.1 BeadChip ||Illumina ||6912 ||
||Illumina BovineLD v.2 BeadChip ||Illumina ||7931 ||
||Illumina Bovine 9K ||Illumina ||8762 ||
||Illumina Bovine ||Illumina ||53218||
||Illumina BovineSNP50v1 BeadChip ||Illumina ||54001||
||Illumina BovineSNP50v2 BeadChip ||Illumina ||54609||
||Illumina BovineHD BeadChip ||Illumina ||777962||
||GeneSeek Dairy Ultra LD v2 ||GeneSeek ||7049||
||GeenSeek Genomic Profiler LD v1 ||GeneSeek ||8610||
||GeneSeek Genomic Profiler ||GeneSeek ||18819||
||GeneSeek Genomic Profiler ||GeneSeek ||19725||
||GeneSeek Genomic Profiler LD v3 ||GeneSeek ||26151||
||GeneSeek Genomic Profiler ||GeneSeek ||30105||
||GeneSeek Genomic Profiler HD ||GeneSeek ||76999||
||GeneSeek Genomic Profiler HD v2 ||GeneSeek ||139480||
||ICBF International Dairy and Beef ||ICBF custom ||16327||
||ICBF International Dairy and Beef ||ICBF custom ||16499||
||ICBF International Dairy and Beef v3 ||ICBF custom ||52690||
||ICBF International Dairy and Beef ||ICBF custom ||53262 ||
||ICBF International Dairy and Beef||ICBF custom||217807||
||DEA custom chip ||DEA custom ||43376||		 = List of genotyping Chips, Platforms and Arrays =
The list above shows all genotyping chips currently accepted by GenoEx-PSE and GenoEx-GDE services.

Please use a platform/array combination for PSE and array for GDE, according to the specific manuals, available on genoex.org

'''Please note''' that the Name of Genotyping Chip column is not to be used in !GenoEx files. It only gives here additional information for proper identifications of the chips used.
||<tablewidth="755px"width="389px" height="20px" class="xl66">Name of Genotyping Chip ||<width="174px" class="xl66">Platform or Lab, or ... ||<width="64px" class="xl66">Array ||<width="64px" class="xl66">PSE ||<width="64px" class="xl66">GDE ||
||<width="389px" height="20px" class="xl65">Affymetrix Axiom Bovine 15K ||<width="174px" class="xl65">Affymetrix ||<width="64px" class="xl65" style="text-align:right">15036 ||x || ||
||<width="389px" height="20px" class="xl65">!GeneChip Bovine Genome ||<width="174px" class="xl65">Affymetrix ||<width="64px" class="xl65" style="text-align:right">24072 ||x || ||
||<width="389px" height="20px" class="xl65">Affymetrix Axiom Bovine 25K ||<width="174px" class="xl65">Affymetrix ||<width="64px" class="xl65" style="text-align:right">25068 ||x || ||
||<width="389px" height="20px" class="xl65">Affymetrix Axiom Bovine 50K ||<width="174px" class="xl65">Affymetrix ||<width="64px" class="xl65" style="text-align:right">51987 ||x || ||
||<width="389px" height="20px" class="xl65">Affymetrix Axiom Bovine ||<width="174px" class="xl65">Affymetrix ||<width="64px" class="xl65" style="text-align:right">648875 ||x || ||
||<width="389px" height="20px" class="xl65">DAC-BS50 ||<width="174px" class="xl65">Illumina ||<width="64px" class="xl65" style="text-align:right">43376 ||x ||x ||
||<width="389px" height="20px" class="xl65">EuroG 10K v2 ||<width="174px" class="xl65">Eurogenomics ||<width="64px" class="xl65" style="text-align:right">9001 ||x || ||
||<width="389px" height="20px" class="xl65">EuroG 10K v1 ||<width="174px" class="xl65">Eurogenomics ||<width="64px" class="xl65" style="text-align:right">9072 ||x || ||
||<width="389px" height="20px" class="xl65">EuroG 10K v4 ||<width="174px" class="xl65">Eurogenomics ||<width="64px" class="xl65" style="text-align:right">9925 ||x || ||
||<width="389px" height="20px" class="xl65">EuroG 10K v3 ||<width="174px" class="xl65">Eurogenomics ||<width="64px" class="xl65" style="text-align:right">9983 ||x || ||
||<width="389px" height="20px" class="xl65">EuroG 10K v7 ||<width="174px" class="xl65">Eurogenomics ||<width="64px" class="xl65" style="text-align:right">10706 ||x || ||
||<width="389px" height="20px" class="xl65">EuroG 10K v8 ||<width="174px" class="xl65">Eurogenomics ||<width="64px" class="xl65" style="text-align:right">10979 ||x || ||
||<width="389px" height="20px" class="xl65">EuroG 10K v6 ||<width="174px" class="xl65">Eurogenomics ||<width="64px" class="xl65" style="text-align:right">11009 ||x || ||
||<width="389px" height="20px" class="xl65">EuroG 10K v5 ||<width="174px" class="xl65">Eurogenomics ||<width="64px" class="xl65" style="text-align:right">11497 ||x || ||
||<width="389px" height="20px" class="xl65">EuroG MD ||<width="174px" class="xl65">Eurogenomics ||<width="64px" class="xl65" style="text-align:right">44870 ||x || ||
||<width="389px" height="20px" class="xl65">!GeneSeek Dairy Ultra LD v2 ||<width="174px" class="xl65">!GeneSeek ||<width="64px" class="xl65" style="text-align:right">7049 ||x || ||
||<width="389px" height="20px" class="xl65">!GeenSeek Genomic Profiler LD v1 ||<width="174px" class="xl65">!GeneSeek ||<width="64px" class="xl65" style="text-align:right">8610 ||x || ||
||<width="389px" height="20px" class="xl65">!GeneSeek Genomic Profiler ||<width="174px" class="xl65">!GeneSeek ||<width="64px" class="xl65" style="text-align:right">18819 ||x ||x ||
||<width="389px" height="20px" class="xl65">!GeneSeek Genomic Profiler ||<width="174px" class="xl65">!GeneSeek ||<width="64px" class="xl65" style="text-align:right">19725 ||x ||x ||
||<width="389px" height="20px" class="xl65">!GeneSeek Genomic Profiler LD v3 ||<width="174px" class="xl65">!GeneSeek ||<width="64px" class="xl65" style="text-align:right">26151 ||x ||x ||
||<width="389px" height="20px" class="xl65">!GeneSeek Genomic Profiler v4 ||<width="174px" class="xl65">!GeneSeek ||<width="64px" class="xl65" style="text-align:right">30105 ||x ||x ||
||<width="389px" height="20px" class="xl65">!GeneSeek Genomic Profiler indicus ||<width="174px" class="xl65">!GeneSeek ||<width="64px" class="xl65" style="text-align:right">35090 ||x || ||
||<width="389px" height="20px" class="xl65">!GeneSeek Genomic Profiler 50K ||<width="174px" class="xl65">!GeneSeek ||<width="64px" class="xl65" style="text-align:right">47662 || ||x ||
||<width="389px" height="20px" class="xl65">!GeneSeek Genomic Profiler 50K ||<width="174px" class="xl65">!GeneSeek ||<width="64px" class="xl65" style="text-align:right">47843 ||x || ||
||<width="389px" height="20px" class="xl65">!GeneSeek Genomic Profiler HD v1 ||<width="174px" class="xl65">!GeneSeek ||<width="64px" class="xl65" style="text-align:right">76999 ||x ||x ||
||<width="389px" height="20px" class="xl65">!GeneSeek Genomic Profiler 80K ||<width="174px" class="xl65">!GeneSeek ||<width="64px" class="xl65" style="text-align:right">77376 ||x || ||
||<height="20px">GGP Bovine 100K ||<width="174px" class="xl65">!GeneSeek ||<width="64px" class="xl65" style="text-align:right">94121 || ||x ||
||<width="389px" height="20px" class="xl65">!GeneSeek Genomic Profiler HD v2 ||<width="174px" class="xl65">!GeneSeek ||<width="64px" class="xl65" style="text-align:right">139480 ||x ||x ||
||<width="389px" height="20px" class="xl65">ICBF International Dairy and Beef ||<width="174px" class="xl65">ICBF custom ||<width="64px" class="xl65" style="text-align:right">16327 ||x ||x ||
||<width="389px" height="20px" class="xl65">ICBF International Dairy and Beef ||<width="174px" class="xl65">ICBF custom ||<width="64px" class="xl65" style="text-align:right">16499 ||x ||x ||
||<width="389px" height="20px" class="xl65">ICBF International Dairy and Beef v3 ||<width="174px" class="xl65">ICBF custom ||<width="64px" class="xl65" style="text-align:right">52690 ||x ||x ||
||<width="389px" height="20px" class="xl65">ICBF International Dairy and Beef ||<width="174px" class="xl65">ICBF custom ||<width="64px" class="xl65" style="text-align:right">53262 ||x || ||
||<width="389px" height="20px" class="xl65">ICBF International Dairy and Beef ||<width="174px" class="xl65">ICBF custom ||<width="64px" class="xl65" style="text-align:right">217807 ||x || ||
||<width="389px" height="20px" class="xl65">Illumina Bovine3k !BeadChip ||<width="174px" class="xl65">Illumina ||<width="64px" class="xl65" style="text-align:right">2900 ||x ||x ||
||<width="389px" height="20px" class="xl65">Illumina BovineLD !BeadChip ||<width="174px" class="xl65">Illumina ||<width="64px" class="xl65" style="text-align:right">6909 ||x ||x ||
||<width="389px" height="20px" class="xl65">Illumina BovineLD v1.1 !BeadChip ||<width="174px" class="xl65">Illumina ||<width="64px" class="xl65" style="text-align:right">6912 ||x || ||
||<width="389px" height="20px" class="xl65">Illumina BovineLD v.2 !BeadChip ||<width="174px" class="xl65">Illumina ||<width="64px" class="xl65" style="text-align:right">7931 ||x ||x ||
||<width="389px" height="20px" class="xl65">Illumina Bovine 9K ||<width="174px" class="xl65">Illumina ||<width="64px" class="xl65" style="text-align:right">8762 ||x ||x ||
||<width="389px" height="20px" class="xl65">Illumina BovineSNP50v3 !BeadChip ||<width="174px" class="xl65">Illumina ||<width="64px" class="xl65" style="text-align:right">53218 ||x ||x ||
||<width="389px" height="20px" class="xl65">Illumina BovineSNP50v1 !BeadChip ||<width="174px" class="xl65">Illumina ||<width="64px" class="xl65" style="text-align:right">54001 ||x ||x ||
||<width="389px" height="20px" class="xl65">Illumina BovineSNP50v2 !BeadChip ||<width="174px" class="xl65">Illumina ||<width="64px" class="xl65" style="text-align:right">54609 ||x ||x ||
||<width="389px" height="20px" class="xl65">Illumina BovineHD !BeadChip ||<width="174px" class="xl65">Illumina ||<width="64px" class="xl65" style="text-align:right">777962 ||x ||x ||
||<width="389px" height="20px" class="xl65">Illumina 800K BovineHD beadChip ||<width="174px" class="xl65">Illumina ||<width="64px" class="xl65" style="text-align:right">786799 ||x || ||
||<width="389px" height="20px" class="xl65">Weatherbys Versa 50K ||<width="174px" class="xl65">Weatherbys ||<width="64px" class="xl65" style="text-align:right">49629 ||x || ||
||<height="20px">Weatherbys Scientific Bovine VersaSNP 50K ||<width="174px" class="xl65">Weatherbys ||<width="64px" class="xl65" style="text-align:right">49745 || ||x ||
||<width="389px" height="20px" class="xl65">GGP Bovine 9K ||<width="174px" class="xl65">Illumina ||<width="64px" class="xl65" style="text-align:right">8984 || ||x ||
||<width="389px" height="20px" class="xl65">Zoetis Low Density Version 5 ||<width="174px" class="xl65">Illumina ||<width="64px" class="xl65" style="text-align:right">27780 || ||x ||
||<width="389px" height="20px" class="xl65">Zoetis ZBT Low Density ||<width="174px" class="xl65">Illumina ||<width="64px" class="xl65" style="text-align:right">38275 || ||x ||
||<width="389px" height="20px" class="xl65">no name ||<width="174px" class="xl65"> ||<width="64px" class="xl65" style="text-align:right">41913 || ||x ||
||<width="389px" height="20px" class="xl65">no name ||<width="174px" class="xl65"> ||<width="64px" class="xl65" style="text-align:right">44887 || ||x ||
||<width="389px" height="20px" class="xl65">Zoetis ZBU Medium Density ||<width="174px" class="xl65">Illumina ||<width="64px" class="xl65" style="text-align:right">58315 || ||x ||
||<width="389px" height="20px" class="xl65">Zoetis Medium Density Version 2 ||<width="174px" class="xl65">Illumina ||<style="text-align:right">60914 || ||x ||
||<width="389px" height="20px" class="xl65">no name ||<width="174px" class="xl65"> ||<style="text-align:right">61792 || ||x ||
||<width="389px" height="20px" class="xl65">Axiom STGen100 !GenVis Medium Density ||<width="174px" class="xl65">Affymetrix ||<style="text-align:right">61915 || ||x ||
||<width="389px" height="20px" class="xl65">Affymetrix SWISScowHD Version 1 ||<width="174px" class="xl65">Affymetrix||<width="64px" class="xl65" style="text-align:right">111839 || ||x ||

List of genotyping Chips, Platforms and Arrays

The list above shows all genotyping chips currently accepted by GenoEx-PSE and GenoEx-GDE services.

Please use a platform/array combination for PSE and array for GDE, according to the specific manuals, available on genoex.org

Please note that the Name of Genotyping Chip column is not to be used in GenoEx files. It only gives here additional information for proper identifications of the chips used.

Name of Genotyping Chip

Platform or Lab, or ...

Array

PSE

GDE

Affymetrix Axiom Bovine 15K

Affymetrix

15036

x

GeneChip Bovine Genome

Affymetrix

24072

x

Affymetrix Axiom Bovine 25K

Affymetrix

25068

x

Affymetrix Axiom Bovine 50K

Affymetrix

51987

x

Affymetrix Axiom Bovine

Affymetrix

648875

x

DAC-BS50

Illumina

43376

x

x

EuroG 10K v2

Eurogenomics

9001

x

EuroG 10K v1

Eurogenomics

9072

x

EuroG 10K v4

Eurogenomics

9925

x

EuroG 10K v3

Eurogenomics

9983

x

EuroG 10K v7

Eurogenomics

10706

x

EuroG 10K v8

Eurogenomics

10979

x

EuroG 10K v6

Eurogenomics

11009

x

EuroG 10K v5

Eurogenomics

11497

x

EuroG MD

Eurogenomics

44870

x

GeneSeek Dairy Ultra LD v2

GeneSeek

7049

x

GeenSeek Genomic Profiler LD v1

GeneSeek

8610

x

GeneSeek Genomic Profiler

GeneSeek

18819

x

x

GeneSeek Genomic Profiler

GeneSeek

19725

x

x

GeneSeek Genomic Profiler LD v3

GeneSeek

26151

x

x

GeneSeek Genomic Profiler v4

GeneSeek

30105

x

x

GeneSeek Genomic Profiler indicus

GeneSeek

35090

x

GeneSeek Genomic Profiler 50K

GeneSeek

47662

x

GeneSeek Genomic Profiler 50K

GeneSeek

47843

x

GeneSeek Genomic Profiler HD v1

GeneSeek

76999

x

x

GeneSeek Genomic Profiler 80K

GeneSeek

77376

x

GGP Bovine 100K

GeneSeek

94121

x

GeneSeek Genomic Profiler HD v2

GeneSeek

139480

x

x

ICBF International Dairy and Beef

ICBF custom

16327

x

x

ICBF International Dairy and Beef

ICBF custom

16499

x

x

ICBF International Dairy and Beef v3

ICBF custom

52690

x

x

ICBF International Dairy and Beef

ICBF custom

53262

x

ICBF International Dairy and Beef

ICBF custom

217807

x

Illumina Bovine3k BeadChip

Illumina

2900

x

x

Illumina BovineLD BeadChip

Illumina

6909

x

x

Illumina BovineLD v1.1 BeadChip

Illumina

6912

x

Illumina BovineLD v.2 BeadChip

Illumina

7931

x

x

Illumina Bovine 9K

Illumina

8762

x

x

Illumina BovineSNP50v3 BeadChip

Illumina

53218

x

x

Illumina BovineSNP50v1 BeadChip

Illumina

54001

x

x

Illumina BovineSNP50v2 BeadChip

Illumina

54609

x

x

Illumina BovineHD BeadChip

Illumina

777962

x

x

Illumina 800K BovineHD beadChip

Illumina

786799

x

Weatherbys Versa 50K

Weatherbys

49629

x

Weatherbys Scientific Bovine VersaSNP 50K

Weatherbys

49745

x

GGP Bovine 9K

Illumina

8984

x

Zoetis Low Density Version 5

Illumina

27780

x

Zoetis ZBT Low Density

Illumina

38275

x

no name

41913

x

no name

44887

x

Zoetis ZBU Medium Density

Illumina

58315

x

Zoetis Medium Density Version 2

Illumina

60914

x

no name

61792

x

Axiom STGen100 GenVis Medium Density

Affymetrix

61915

x

Affymetrix SWISScowHD Version 1

Affymetrix

111839

x

public/platforms_arrays (last edited 2024-01-30 17:20:58 by KatarineHaugaard)