List of genotyping Chips, Platforms and Arrays

The list above shows all genotyping chips currently accepted by GenoEx-PSE and GenoEx-GDE services.

Please use a platform/array combination for PSE and array for GDE, according to the specific manuals, available on genoex.org

Please note that the Name of Genotyping Chip column is not to be used in GenoEx files. It only gives here additional information for proper identifications of the chips used.

Name of Genotyping Chip	Platform or Lab, or ...	SNPs number	GDE Array Identifier	PSE	GDE
Affymetrix Axiom Bovine 15K	Affymetrix	15036		x
GeneChip Bovine Genome	Affymetrix	24072		x
Affymetrix Axiom Bovine 25K	Affymetrix	25068		x
Affymetrix Axiom Bovine Swiss custom LD v1	Affymetrix	42612	42612_a		x
Affymetrix Axiom Bovine 50K	Affymetrix	51987		x
Affymetrix Axiom STGen100 GenVis Medium Density	Affymetrix	61915	61915_a		x
Affymetrix Axiom STGen100 GenVis Medium Density V2	Affymetrix	63836	63836_a		x
Affymetrix SWISScowHD Version 1	Affymetrix	111839	111839_a		x
Affymetrix SWISScowHD Version 2	Affymetrix	95053	95053_a		x
Affymetrix Axiom Bovine	Affymetrix	648875		x
DAC-BS50	Illumina	43376	43376_a	x	x
EuroG 10K v2	Eurogenomics	9001		x
EuroG 10K v1	Eurogenomics	9072		x
EuroG 10K v4	Eurogenomics	9925		x
EuroG 10K v3	Eurogenomics	9983		x
EuroG 10K v7	Eurogenomics	10706		x
EuroG 10K v8	Eurogenomics	10979		x
EuroG 10K v6	Eurogenomics	11009		x
EuroG 10K v5	Eurogenomics	11497		x
EuroG MD v1	Eurogenomics	44870		x
EuroG MD v1	Eurogenomics (lab. Labogena)	41911	41911_a		x
EuroG MD v1	Eurogenomics	41913	41913_a		x
EuroG MD v2	Eurogenomics	45250	45250_a		x
EuroG MD v3	Eurogenomics	59963	59963_a		x
GeneSeek Dairy Ultra LD v2	GeneSeek	7049		x
GeenSeek Genomic Profiler LD v1	GeneSeek	8610		x
GeenSeek Genomic Profiler 9K	GeneSeek	8984	8984_a		x
GeneSeek Genomic Profiler	GeneSeek	19725	19725_a	x	x
GeneSeek Genomic Profiler LD v3	GeneSeek	26151	26151_a	x	x
GeneSeek Genomic Profiler LD v3	GeneSeek	26151	26151_b		x
GeneSeek Genomic Profiler v4	GeneSeek	30105	30105_a	x	x
GeneSeek Genomic Profiler SuperLD v4	GeneSeek	30111	30111_a		x
GeneSeek Genomic Profiler indicus	GeneSeek	35090		x
GeneSeek Genomic Profiler 50K	GeneSeek	47662	47662_a		x
GeneSeek Genomic Profiler 50K	GeneSeek	47843	47843_a	x	x
GeneSeek Genomic Profiler 65K	GeneSeek	65317	65317_a		x
GeneSeek Genomic Profiler HD v1	GeneSeek	76999	76999_a	x	x
GeneSeek Genomic Profiler 80K	GeneSeek	77376		x
GeneSeek Genomic Profiler Bovine 100K	GeneSeek	95256	95256_a		x
GeneSeek Genomic Profiler Bovine 100K (custom CDCB)	GeneSeek	94121	94121_a		x
GeneSeek Genomic Profiler HD v2	GeneSeek	139480	139480_a	x	x
GeneSeek Genomic Profiler HD v3	GeneSeek	139376	139376_a		x
ICBF International Dairy and Beef v2	ICBF custom	16327	16327_a	x	x
ICBF International Dairy and Beef v1	ICBF custom	16499	16499_a	x	x
ICBF International Dairy and Beef v3	ICBF custom	52690	52690_a	x	x
ICBF International Dairy and Beef v4	Thermofisher	53262		x
ICBF International Dairy and Beef	ICBF custom	217807		x
Illumina Bovine3k BeadChip	Illumina	2900	2900_a	x	x
Illumina BovineLD BeadChip	Illumina	6909	6909_a	x	x
Illumina BovineLD v1.1 BeadChip	Illumina	6912		x
Illumina BovineLD v.2 BeadChip	Illumina	7931	7931_a	x	x
Illumina Bovine 9K	Illumina	8762	8762_a	x	x
Illumina BovineSNP50v3 BeadChip	Illumina	53218	53218_a	x	x
Illumina BovineSNP50v1 BeadChip	Illumina	54001	54001_a	x	x
Illumina BovineSNP50v2 BeadChip	Illumina	54609	54609_a	x	x
Illumina BovineHD BeadChip	Illumina	777962	777962_a	x	x
Illumina 800K BovineHD beadChip	Illumina	786799		x
LIAJ custom chip v1	Illumina	50464		x
Weatherbys Versa 50K	Weatherbys	49629		x
Weatherbys Scientific Bovine VersaSNP 50K	Weatherbys	49745	49745_a		x
Zoetis Low Density Version 5	Illumina	27780	27780_a		x
Zoetis Low Density Version 4	Illumina	18819	18819_a	x	x
Zoetis Low Density Version 4	Illumina	18815	18815_a		x
Zoetis ZBT Low Density	Illumina	38275	38275_a		x
Zoetis ZBU Medium Density	Illumina	55341	55341_a		x
Zoetis ZBU Medium Density	Illumina	58315	58315_a		x
Zoetis Medium Density Version 2	Illumina	60914	60914_a		x
no name		44887	44887_a		x
no name		61792	61792_a		x