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| The [[https://wiki.interbull.org/public/gebvtest.py?action=print|gebvtest.py]] program offers an option (''-m, --mergefiles'') to create a file of merged Cf/Df/Cr/Gr records as a convenience to the user. These files can make it easier to check for the correctness of the input datasets and they can be used perform additional checks and/or statistical analyses, using R for example as in this small [[attachment:test.R]]. | The [[https://wiki.interbull.org/public/gebvtest_py?action=print|gebvtest.py]] program offers an option (''-m, --mergefiles'') to create a file of merged Cf/Df/Cr/Gr records as a convenience to the user. These files can make it easier to check for the correctness of the input datasets and they can be used perform additional checks and/or statistical analyses, using R for example as in this small [[attachment:test.R]]. |
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| ||9||Cf||char(2)||Fixed separator for Cf info|| ||10||edc||int||EDC from Cf file|| ||11||rel||real||Reliability from Cf file (x100)|| ||12||ebv||real||Predicted genetic merit ("proof") from Cf file|| ||13||Df||char(2)||Fixed separator for Df info|| ||14||edcd||int||EDC from Df file|| ||15||reld||real||Reliability from Df file (x100)|| ||16||dpgm||real||DD or deregressed proof from Df file|| ||17||Cr||char(2)||Fixed separator for Cr info|| ||18||edcr||int||EDC from Cr file|| ||19||relr||real||Reliability from Cr file (x100)|| ||20||ebvr||real||Predicted genetic merit ("proof") from Cr file|| ||21||Gr||char(2)||Fixed separator for Gr info|| ||18||edcg||int||EDC from Gr file|| ||19||relg||real||Reliability from Gr file (x100)|| ||20||gebv||real||GEBV from Gr file|| |
||9||nd||int||Number of daughters (from Cf file)|| ||10||nh||int||Number of herds (from Cf file)|| ||11||Cf||char(2)||Fixed separator for Cf info|| ||12||edc||int||EDC from Cf file|| ||13||rel||real||Reliability from Cf file (x100)|| ||14||ebv||real||Predicted genetic merit ("proof") from Cf file|| ||15||Df||char(2)||Fixed separator for Df info|| ||16||edcd||int||EDC from Df file|| ||17||reld||real||Reliability from Df file (x100)|| ||18||dpgm||real||DD or deregressed proof from Df file|| ||19||Cr||char(2)||Fixed separator for Cr info|| ||20||edcr||int||EDC from Cr file|| ||21||relr||real||Reliability from Cr file (x100)|| ||22||ebvr||real||Predicted genetic merit ("proof") from Cr file|| ||23||Gr||char(2)||Fixed separator for Gr info|| ||24||edcg||int||EDC from Gr file|| ||25||relg||real||Reliability from Gr file (x100)|| ||26||gebv||real||GEBV from Gr file|| |
GEBVtest Merged Files
The gebvtest.py program offers an option (-m, --mergefiles) to create a file of merged Cf/Df/Cr/Gr records as a convenience to the user. These files can make it easier to check for the correctness of the input datasets and they can be used perform additional checks and/or statistical analyses, using R for example as in this small test.R.
One file is created for each trait present in the traits_POPBRD file and the file300Xy_POPBRD files. There is a record for each bull present in the Cf file born in/after the cutoff year specified in the traits_POPBRD file. Flags are supplied to indicate whether the bull qualifies as a candidate or a test bull. Please see the file format below.
By default, the files are created in directory DATADIR/merged. The merged files do not have a _POPBRD extension, so if you would like to create files for more than one population or breed, you should also supply the -M, --mergedir option with a different destination directory for each population/breed. The destination directory can be an absolute path, or it can be relative to the programs directory (eg. ../sample_data/my_merges). The directory will be created automatically if it does not exist.
File format
The file is in comma-separated-variable (csv) format, using commas as the separator.
Column |
Variable |
Type |
Description |
1 |
aid |
char(19) |
animal ID |
2 |
byear |
int |
Birth year |
3 |
geno |
char(1) |
Bull has a GEBV (Gr) record (Y/N) |
4 |
cand |
char(1) |
Bull qualifies as a candidate bull (Y/N) |
5 |
test |
char(1) |
Bull qualifies as a test bull (Y/N) |
6 |
top |
char(2) |
Type of proof (from Cf file) |
7 |
off |
char(1) |
Official proof (Y/N; from Cf file) |
8 |
sta |
char(2) |
Bull status (from Cf file) |
9 |
nd |
int |
Number of daughters (from Cf file) |
10 |
nh |
int |
Number of herds (from Cf file) |
11 |
Cf |
char(2) |
Fixed separator for Cf info |
12 |
edc |
int |
EDC from Cf file |
13 |
rel |
real |
Reliability from Cf file (x100) |
14 |
ebv |
real |
Predicted genetic merit ("proof") from Cf file |
15 |
Df |
char(2) |
Fixed separator for Df info |
16 |
edcd |
int |
EDC from Df file |
17 |
reld |
real |
Reliability from Df file (x100) |
18 |
dpgm |
real |
DD or deregressed proof from Df file |
19 |
Cr |
char(2) |
Fixed separator for Cr info |
20 |
edcr |
int |
EDC from Cr file |
21 |
relr |
real |
Reliability from Cr file (x100) |
22 |
ebvr |
real |
Predicted genetic merit ("proof") from Cr file |
23 |
Gr |
char(2) |
Fixed separator for Gr info |
24 |
edcg |
int |
EDC from Gr file |
25 |
relg |
real |
Reliability from Gr file (x100) |
26 |
gebv |
real |
GEBV from Gr file |